Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. Cancers 12, 2878 (2020). https://doi.org/10.3390/cancers12102878

Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. iScience 25, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944

Nakakuki, T. et al. Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics. Cell 141, 884–896 (2010). https://doi.org/10.1016/j.cell.2010.03.054

Yao, G., Lee, T. J., Mori, S., Nevins, J. R. & You, L. A bistable Rb-E2F switch underlies the restriction point. Nat. Cell Biol. 10, 476–482 (2008). https://doi.org/10.1038/ncb1711

Barr, A. R., Heldt, F. S., Zhang, T., Bakal, C. & Novák, B. A Dynamical Framework for the All-or-None G1/S Transition. Cell Syst. 2, 27–37 (2016). https://doi.org/10.1016/j.cels.2016.01.001

Rata, S. et al. Two Interlinked Bistable Switches Govern Mitotic Control in Mammalian Cells. Curr. Biol. 28, 3824-3832.e6 (2018). https://doi.org/10.1016/j.cub.2018.09.059